Thesis

Meredith, L. K. (2013).听Field measurement of the fate of atmospheric H鈧 in a forest environment鈥: from canopy to soil聽[Massachusetts Institute of Technology].听

Preprints

Mitchison-Field, L. M. Y., Vargas-Mu帽iz, J. M., Stormo, B. M., Vogt, E. J. D., Van Dierdonck, S., Ehrlich, C., Lew, D. J., Field, C. M., & Gladfelter, A. S. (2019). Unconventional cell division cycles from marine-derived yeasts.听BioRxiv, 657254.听

Fiebig, A. (2019). The role of Caulobacter cell surface structures in colonization of the air-liquid interface.听BioRxiv, 524058.听

Journal articles

Yang, T., Teske, A., Ambrose, W., Salman-Carvalho, V., Bagnell, R., & Nielsen, L. P. (2019). Intracellular calcite and sulfur dynamics of Achromatium cells observed in a lab-based enrichment and aerobic incubation experiment.听Antonie van Leeuwenhoek,听112(2), 263鈥274.听

Mitchison-Field, L. M. Y., Vargas-Mu帽iz, J. M., Stormo, B. M., Vogt, E. J. D., Van Dierdonck, S., Pelletier, J. F., Ehrlich, C., Lew, D. J., Field, C. M., & Gladfelter, A. S. (2019). Unconventional Cell Division Cycles from Marine-Derived Yeasts.听Current Biology,听29(20), 3439-3456.e5.听

Fiebig, A. (2019). Role of Caulobacter Cell Surface Structures in Colonization of the Air-Liquid Interface.听Journal of Bacteriology,听201(18).听

Guzman, M. S., Kuse, J. C., Santiago-Merced, N., & Bose, A. (2019). Draft Genome Sequences of Two Closely Related Marichromatium Isolates, Photosynthetic Gammaproteobacteria from Marine Ecosystems.听Microbiology Resource Announcements,听8(2).听

Kee, H. L., Mikheyeva, I. V., Mickol, R. L., Dawson, S. C., Newman, D. K., & Leadbetter, J. R. (2019). Draft Genome Sequence of the Iridescent Marine Bacterium Tenacibaculum discolor Strain IMLK18.听Microbiology Resource Announcements,听8(5).听

Perry, E. K., & Newman, D. K. (2019). The transcription factors ActR and SoxR differentially affect the phenazine tolerance of Agrobacterium tumefaciens.听Molecular Microbiology, mmi.14263.听

Perry, E. K., & Newman, D. K. (2019). The transcription factors ActR and SoxR differentially affect the phenazine tolerance of Agrobacterium tumefaciens.听Molecular Microbiology, mmi.14263.听

Huang, Y. Y., Mart铆nez-del Campo, A., & Balskus, E. P. (2018). Anaerobic 4-hydroxyproline utilization: Discovery of a new glycyl radical enzyme in the human gut microbiome uncovers a widespread microbial metabolic activity.听Gut Microbes, 1鈥16.听

Wilbanks, E. G., Salman-Carvalho, V., Jaekel, U., Humphrey, P. T., Eisen, J. A., Buckley, D. H., & Zinder, S. H. (2017). The Green Berry Consortia of the Sippewissett Salt Marsh: Millimeter-Sized Aggregates of Diazotrophic Unicellular Cyanobacteria.听Frontiers in Microbiology,听8.听

Guzman, M. S., McGinley, B., Santiago-Merced, N., Gupta, D., & Bose, A. (2017). Draft Genome Sequences of Three Closely Related Isolates of the Purple Nonsulfur Bacterium Rhodovulum sulfidophilum.听Genome Announcements,听5(11).听

Alexiev, A., Krusor, M. L., Jospin, G., Lang, J. M., Eisen, J. A., & Coil, D. A. (2016). Draft Genome Sequence of Cobetia sp. UCD-24C, Isolated from Roots and Leaves of the Seagrass Zostera marina.听Genome Announcements,听4(2).听

Liu, X.-L., De Santiago Torio, A., Bosak, T., & Summons, R. E. (2016). Novel archaeal tetraether lipids with a cyclohexyl ring identified in Fayetteville Green Lake, NY, and other sulfidic lacustrine settings.听Rapid Communications in Mass Spectrometry,听30(10), 1197鈥1205.听

Alexiev, A., Krusor, M. L., Jospin, G., Lang, J. M., Eisen, J. A., & Coil, D. A. (2016). Draft Genome Sequences of Two Pseudoalteromonas Strains Isolated from Roots and Leaf Blades of the Seagrass Zostera marina.听Genome Announcements,听4(1).听

Thauer, R. K. (2015). My Lifelong Passion for Biochemistry and Anaerobic Microorganisms.听Annual Review of Microbiology,听69(1), 1鈥30.听

Pepe-Ranney, C., & Hall, E. K. (2015). The effect of carbon subsidies on marine planktonic niche partitioning and recruitment during biofilm assembly.听Frontiers in Microbiology,听6.听

Rowe, A. R., Chellamuthu, P., Lam, B., Okamoto, A., & Nealson, K. H. (2015). Marine sediments microbes capable of electrode oxidation as a surrogate for lithotrophic insoluble substrate metabolism.听Frontiers in Microbiology,听5.听

Mariita, R. M., Bhatnagar, S., Hanselmann, K., Hossain, M. J., Korlach, J., Boitano, M., Roberts, R. J., Liles, M. R., Moss, A. G., Leadbetter, J. R., Newman, D. K., & Dawson, S. C. (2015). Complete Genome Sequence of Curtobacterium sp. Strain MR_MD2014, Isolated from Topsoil in Woods Hole, Massachusetts.听Genome Announcements,听3(6).听

Mariita, R. M., Bhatnagar, S., Hanselmann, K., Hossain, M. J., Korlach, J., Boitano, M., Roberts, R. J., Liles, M. R., Moss, A. G., Leadbetter, J. R., Newman, D. K., & Dawson, S. C. (2015). Complete Genome Sequence of Streptomyces sp. Strain CCM_MD2014, Isolated from Topsoil in Woods Hole, Massachusetts.听Genome Announcements,听3(6).听

Jones, D. S., Bailey, J. V., & Flood, B. E. (2015). Sedimenticola thiotaurini sp. nov., a sulfur-oxidizing bacterium isolated from salt marsh sediments, and emended descriptions of the genus Sedimenticola and Sedimenticola selenatireducens.听International Journal of Systematic and Evolutionary Microbiology,听65(8), 2522鈥2530.听

Kleindienst, S., Seidel, M., Ziervogel, K., Grim, S., Loftis, K., Harrison, S., Malkin, S. Y., Perkins, M. J., Field, J., Sogin, M. L., Dittmar, T., Passow, U., Medeiros, P. M., & Joye, S. B. (2015). Chemical dispersants can suppress the activity of natural oil-degrading microorganisms.听Proceedings of the National Academy of Sciences,听112(48), 14900鈥14905.听

Salman, V., Yang, T., Berben, T., Klein, F., Angert, E., & Teske, A. (2015). Calcite-accumulating large sulfur bacteria of the genus Achromatium in Sippewissett Salt Marsh.听The ISME Journal,听9(11), 2503鈥2514.听

Br盲uer, S. L., Vuono, D., Carmichael, M. J., Pepe-Ranney, C., Strom, A., Rabinowitz, E., Buckley, D. H., & Zinder, S. H. (2014). Microbial Sequencing Analyses Suggest the Presence of a Fecal Veneer on Indoor Climbing Wall Holds.听Current Microbiology.听

Wilbanks, E. G., Jaekel, U., Salman, V., Humphrey, P. T., Eisen, J. A., Faccioti, M. T., Buckley, D. H., Zinder, S. H., Druschel, G. K., Fike, D. A., & Orphan, V. J. (2014). Microscale sulfur cycling in the phototrophic pink berry consortia of the sippewissett salt marsh.听Environmental Microbiology,听16(11), 3398鈥3415.听

Meredith, L. K., Rao, D., Bosak, T., Klepac-Ceraj, V., Tada, K. R., Hansel, C. M., Ono, S., & Prinn, R. G. (2014). Consumption of atmospheric hydrogen during the life cycle of soil-dwelling actinobacteria.听Environmental Microbiology Reports,听6(3), 226鈥238.听

Blasiak, L. C., Zinder, S. H., Buckley, D. H., & Hill, R. T. (2014). Bacterial diversity associated with the tunic of the model chordate Ciona intestinalis.听The ISME Journal,听8(2), 309鈥320.听

McNulty, N. P., Wu, M., Erickson, A. R., Pan, C., Erickson, B. K., Martens, E. C., Pudlo, N. A., Muegge, B. D., Henrissat, B., Hettich, R. L., & Gordon, J. I. (2013). Effects of Diet on Resource Utilization by a Model Human Gut Microbiota Containing Bacteroides cellulosilyticus WH2, a Symbiont with an Extensive Glycobiome.听PLoS Biology,听11(8).听

Armitage, D. W., Gallagher, K. L., Youngblut, N. D., Buckley, D. H., & Zinder, S. H. (2012). Millimeter-scale patterns of phylogenetic and trait diversity in a salt marsh microbial mat.听Frontiers in Microbiology,听3(AUG).听

Adebusoye, S. A., & Miletto, M. (2011). Characterization of multiple chlorobenzoic acid-degrading organisms from pristine and contaminated systems: Mineralization of 2,4-dichlorobenzoic acid.听Bioresource Technology,听102(3), 3041鈥3048.听

Shapiro, O. H., Hatzenpichler, R., Buckley, D. H., Zinder, S. H., & Orphan, V. J. (2011). Multicellular photo-magnetotactic bacteria.听Environmental Microbiology Reports,听3(2), 233鈥238.听

Burgin, A. J., & Hamilton, S. K. (2008). NO(3)(-)-driven SO(4)(2-) production in freshwater ecosystems: Implications for N and S cycling.听ECOSYSTEMS,听11(6), 908鈥922.听

Breznak, J. A., & Warnecke, F. (2008). Spirochaeta cellobiosiphila sp. nov., a facultatively anaerobic, marine spirochaete.听INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY,听58(12), 2762鈥2768.听

Lennon, J. T. (2007). Diversity and Metabolism of Marine Bacteria Cultivated on Dissolved DNA.听Applied and Environmental Microbiology,听73(9), 2799鈥2805.听

Saltikov, C. W., Cifuentes, A., Venkateswaran, K., & Newman, D. K. (2003). The ars Detoxification System Is Advantageous but Not Required for As(V) Respiration by the Genetically Tractable Shewanella Species Strain ANA-3.听Applied and Environmental Microbiology,听69(5), 2800鈥2809.听

Whittle, G., Whitehead, T. R., Hamburger, N., Shoemaker, N. B., Cotta, M. A., & Salyers, A. A. (2003). Identification of a New Ribosomal Protection Type of Tetracycline Resistance Gene, tet(36), from Swine Manure Pits.听Applied and Environmental Microbiology,听69(7), 4151鈥4158.听

Zaar, A., Fuchs, G., Golecki, J. R., & Overmann, J. (2003). A new purple sulfur bacterium isolated from a littoral microbial mat, Thiorhodococcus drewsii sp. nov.听Archives of Microbiology,听179(3), 174鈥183.听

Rajagopal, S., Eis, N., & Nickerson, K. W. (2003). Eight Gram-negative bacteria are 10 000 times more sensitive to cationic detergents than to anionic detergents.听Canadian Journal of Microbiology,听49(12), 775鈥779.听

Niggemyer, A., Spring, S., Stackebrandt, E., & Rosenzweig, R. F. (2001). Isolation and Characterization of a Novel As(V)-Reducing Bacterium: Implications for Arsenic Mobilization and the Genus Desulfitobacterium.听Applied and Environmental Microbiology,听67(12), 5568鈥5580.听

Whittle, G., Hund, B. D., Shoemaker, N. B., & Salyers, A. A. (2001). Characterization of the 13-KilobaseermF Region of the BacteroidesConjugative Transposon CTnDOT.听Applied and Environmental Microbiology,听67(8), 3488鈥3495.听

Shoemaker, N. B., Vlamakis, H., Hayes, K., & Salyers, A. A. (2001). Evidence for Extensive Resistance Gene Transfer among Bacteroides spp. and among Bacteroides and Other Genera in the Human Colon.听Applied and Environmental Microbiology,听67(2), 561鈥568.听

Whittle, G., Hund, B. D., Shoemaker, N. B., & Salyers, A. A. (2001). Characterization of the 13-KilobaseermF Region of the BacteroidesConjugative Transposon CTnDOT.听Applied and Environmental Microbiology,听67(8), 3488 LP 鈥 3495.听

Barbieri, E., Paster, B. J., Hughes, D., Zurek, L., Moser, D. P., Teske, A., & Sogin, M. L. (2001). Phylogenetic characterization of epibiotic bacteria in the accessory nidamental gland and egg capsules of the squid Loligo pealei (Cephalopoda: Loliginidae).听Environmental Microbiology,听3(3), 151鈥167.听

Christner, B. C., Mosley鈥怲hompson, E., Thompson, L. G., & Reeve, J. N. (2001). Isolation of bacteria and 16S rDNAs from Lake Vostok accretion ice.听Environmental Microbiology,听3(9), 570鈥577.听

Spear, J. R., Figueroa, L. A., & Honeyman, B. D. (2000). Modeling Reduction of Uranium U(VI) under Variable Sulfate Concentrations by Sulfate-Reducing Bacteria.听Applied and Environmental Microbiology,听66(9), 3711鈥3721.听

Plugge, C. M., Zoetendal, E. G., & Stams, A. J. (2000). Caloramator coolhaasii sp. nov., a glutamate-degrading, moderately thermophilic anaerobe.听International Journal of Systematic and Evolutionary Microbiology,听50(3), 1155鈥1162.听

Glaeser, J., & Overmann, J. (1999). Selective enrichment and characterization of Roseospirillum parvum, gen. nov. and sp. nov., a new purple nonsulfur bacterium with unusual light absorption properties.听Archives of Microbiology,听171(6), 405鈥416.听

Salyers, A. (1999). Microbial diversity 鈥 the past and future of microbiology. In recognition of the centennial of the American Society for Microbiology.听Environmental Microbiology,听1(1), 5鈥7.听

Leonardo, M. R., Moser, D. P., Barbieri, E., Brantner, C. A., MacGregor, B. J., Paster, B. J., Stackebrandt, E., & Nealson, K. H. (1999). Shewanella pealeana sp. nov., a member of the microbial community associated with the accessory nidamental gland of the squid Loligo pealei.听International Journal of Systematic and Evolutionary Microbiology,听49(4), 1341鈥1351.听

Vetriani, C., Reysenbach, A.-L., & Dor脙漏, J. (1998). Recovery and phylogenetic analysis of archaeal rRNA sequences from continental shelf sediments.听FEMS Microbiology Letters,听161(1), 83鈥88.听

Sackett, M. J., Armitage, J. P., Sherwood, E. E., & Pitta, T. P. (1997). Photoresponses of the purple nonsulfur bacteria Rhodospirillum centenum and Rhodobacter sphaeroides.听Journal of Bacteriology,听179(21), 6764鈥6768.听

Ochs, C. A. (1997). Effects of UV radiation on grazing by two marine heterotrophic nanoflagellates on autotrophic picoplankton.听Journal of Plankton Research,听19(10), 1517鈥1536.听

Lie, T. J., Pitta, T., Leadbetter, E. R., Godchaux III., W., & Leadbetter, J. R. (1996). Sulfonates: novel electron acceptors in anaerobic respiration.听Archives of Microbiology,听166(3), 204鈥210.听